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Full benchmark results

AF-results190511.zip (12.3 GB) md5sum: 10cb24c4960d5aac844c0f3a1650fc0e
File structure
Path Description
[dataset_category]/ Directory: benchmark category name, e.g. genreg (Regulatory Sequences)
[dataset_name]/ Directory: data set name (e.g., crm, swisstree)
[tool_name]/ Directory: Tool name (e.g., FFP, mash, alfpy--canberra)
[tool_run]/ Directory: Tool run name (e.g., run1, kmer4)
log.txt A log file containing paramater values used in tool run (e.g., k = 4)
[tool_output].[tsv/phy/newick] Raw output file obtained from tool run.
[tool_output].[tsv/phy/newick].clean Clean output file (e.g., with removed unnecessary pairwise comparisons)
benchmark.json JSON file containing benchmark results of tool run (e.g., Robinson-Foulds distance, AUC values)
summary.json JSON file summarizing benchmark results from all tool runs of given tool. The results in the file are ordeded by the obtained performance. First result in the file (best performance) was selected and saved in the AFproject database.

Reference data sets

AF-reference_datasets190511.zip (9.8 GB) md5sum: ad66a15ac4be63477206511923ec0a07