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Hierarchical exploration of TRG genes through taxonomy of Bacteria

Taxon name Taxon rank Species (n) Proteins (n) TRG genus (n) TRG species (n) Details
Streptococcus acidominimus species 1 2,110 111 44
Streptococcus agalactiae species 1 2,127 81 39
Streptococcus alactolyticus species 1 1,754 61 15
Streptococcus anginosus species 1 1,869 88 6
Streptococcus anginosus_C species 1 1,884 61 6
Streptococcus australis species 1 1,996 92 1
Streptococcus australis_A species 1 1,851 73 2
Streptococcus australis_B species 1 1,908 86 5
Streptococcus australis_C species 1 1,783 75 2
Streptococcus australis_D species 1 2,122 140 4
Streptococcus azizii species 1 2,022 94 21
Streptococcus bovimastitidis species 1 2,063 67 23
Streptococcus caballi species 1 2,121 79 39
Streptococcus canis species 1 1,974 78 16
Streptococcus castoreus species 1 1,824 90 24
Streptococcus catagoni species 1 1,976 58 33
Streptococcus chenjunshii species 1 2,243 93 51
Streptococcus chosunense species 1 1,748 97 3
Streptococcus constellatus species 1 1,802 55 8
Streptococcus constellatus_A species 1 2,036 64 14
Streptococcus criceti species 1 2,185 96 30
Streptococcus cristatus species 1 1,898 98 5
Streptococcus cristatus_A species 1 2,152 133 11
Streptococcus cristatus_B species 1 2,111 135 9
Streptococcus cristatus_C species 1 2,267 152 6
Streptococcus cristatus_D species 1 1,913 96 4
Streptococcus cristatus_E species 1 2,150 134 7
Streptococcus cristatus_F species 1 2,035 104 7
Streptococcus cristatus_G species 1 1,996 121 3
Streptococcus cuniculi species 1 2,020 83 18
Streptococcus cuniculi_A species 1 2,486 124 70
Streptococcus danieliae species 1 1,906 125 36
Streptococcus danieliae_A species 1 2,035 132 49
Streptococcus dentisani species 1 1,726 56 0
Streptococcus devriesei species 1 2,024 51 17
Streptococcus didelphis species 1 1,803 42 21
Streptococcus downei species 1 2,069 95 42
Streptococcus downii species 1 1,864 88 4
Streptococcus dysgalactiae species 1 2,147 110 19
Streptococcus entericus species 1 2,023 75 58
Streptococcus equi species 1 2,303 114 41
Streptococcus equinus species 1 1,711 48 5
Streptococcus equinus_B species 1 1,918 61 33
Streptococcus equinus_D species 1 1,823 65 8
Streptococcus ferus species 1 1,821 44 17
Streptococcus gallinaceus species 1 2,076 63 26
Streptococcus gallolyticus species 1 2,418 109 23
Streptococcus gallolyticus_B species 1 2,223 79 32
Streptococcus gallolyticus_C species 1 2,291 83 44
Streptococcus gordonii species 1 2,091 99 13
Streptococcus gordonii_A species 1 2,178 120 37
Streptococcus gwangjuense species 1 1,850 110 2
Streptococcus halichoeri species 1 1,705 51 44
Streptococcus halitosis species 1 1,799 65 1
Streptococcus halotolerans species 1 1,955 82 30
Streptococcus henryi species 1 2,334 69 45
Streptococcus hillyeri species 1 2,063 111 55
Streptococcus himalayensis species 1 2,105 97 37
Streptococcus hyointestinalis species 1 2,544 135 68
Streptococcus hyointestinalis_A species 1 2,318 161 78
Streptococcus hyovaginalis species 1 2,059 70 32
Streptococcus ictaluri species 1 2,471 147 45
Streptococcus ilei species 1 1,862 88 2
Streptococcus infantarius species 1 1,961 83 5
Streptococcus infantis species 1 1,862 91 2
Streptococcus infantis_B species 1 1,589 51 14
Streptococcus infantis_C species 1 1,766 74 1
Streptococcus infantis_E species 1 1,982 102 7
Streptococcus infantis_F species 1 1,906 87 1
Streptococcus infantis_G species 1 2,139 155 5
Streptococcus infantis_H species 1 1,744 89 1
Streptococcus infantis_I species 1 1,667 59 1
Streptococcus infantis_J species 1 1,670 66 2
Streptococcus infantis_K species 1 1,649 61 1
Streptococcus infantis_L species 1 1,930 91 6
Streptococcus iniae species 1 1,912 58 23
Streptococcus intermedius species 1 1,875 79 24
Streptococcus lactarius species 1 1,992 114 12
Streptococcus loxodontisalivarius species 1 2,082 73 28
Streptococcus lutetiensis species 1 1,774 58 3
Streptococcus macacae species 1 1,799 55 27
Streptococcus macedonicus species 1 2,149 70 8
Streptococcus marimammalium species 1 1,437 43 16
Streptococcus marmotae species 1 2,260 132 41
Streptococcus massiliensis species 1 1,929 26 19
Streptococcus merionis species 1 2,151 38 52
Streptococcus minor species 1 1,913 59 28
Streptococcus mitis species 1 1,736 73 1
Streptococcus mitis_A species 1 1,974 126 4
Streptococcus mitis_AC species 1 2,050 143 2
Streptococcus mitis_AD species 1 1,884 118 6
Streptococcus mitis_AF species 1 2,015 131 4
Streptococcus mitis_AH species 1 1,707 81 0
Streptococcus mitis_AI species 1 2,194 122 5
Streptococcus mitis_AK species 1 1,806 81 0
Streptococcus mitis_AP species 1 2,014 120 1
Streptococcus mitis_AQ species 1 1,797 99 2
Streptococcus mitis_AR species 1 2,050 114 4
Streptococcus mitis_AT species 1 1,961 119 0
Streptococcus mitis_AV species 1 1,958 119 2
Streptococcus mitis_AW species 1 1,901 104 4
Streptococcus mitis_AX species 1 1,848 87 0
Streptococcus mitis_AY species 1 1,992 102 3
Streptococcus mitis_AZ species 1 1,748 73 2
Streptococcus mitis_BA species 1 2,186 174 4
Streptococcus mitis_BB species 1 1,852 79 9
Streptococcus mitis_BC species 1 1,852 86 1
Streptococcus mitis_BD species 1 1,905 107 2
Streptococcus mitis_BE species 1 1,970 126 3
Streptococcus mitis_BF species 1 2,244 152 15
Streptococcus mitis_BG species 1 1,686 61 2
Streptococcus mitis_BH species 1 1,792 87 2
Streptococcus mitis_BI species 1 1,911 104 0
Streptococcus mitis_BJ species 1 2,027 94 4
Streptococcus mitis_BK species 1 1,894 114 6
Streptococcus mitis_BL species 1 2,026 112 5
Streptococcus mitis_BM species 1 1,903 122 1
Streptococcus mitis_BN species 1 1,974 109 2
Streptococcus mitis_BO species 1 1,934 92 0
Streptococcus mitis_BP species 1 1,854 81 3
Streptococcus mitis_BQ species 1 2,081 124 5
Streptococcus mitis_BR species 1 2,027 121 2
Streptococcus mitis_BS species 1 1,941 113 4
Streptococcus mitis_BT species 1 1,931 114 1
Streptococcus mitis_BU species 1 1,865 91 2
Streptococcus mitis_BV species 1 1,877 88 5
Streptococcus mitis_BW species 1 1,934 96 2
Streptococcus mitis_C species 1 1,966 117 3
Streptococcus mitis_D species 1 2,096 126 9
Streptococcus mitis_E species 1 2,029 116 2
Streptococcus mitis_F species 1 1,938 111 1
Streptococcus mitis_H species 1 1,946 117 1
Streptococcus mitis_I species 1 1,944 131 0
Streptococcus mitis_J species 1 2,099 161 22
Streptococcus mitis_K species 1 1,843 94 2
Streptococcus mitis_L species 1 1,917 124 1
Streptococcus mitis_M species 1 1,966 99 2
Streptococcus mitis_N species 1 1,861 113 2
Streptococcus mitis_O species 1 2,083 160 5
Streptococcus mitis_P species 1 1,835 86 0
Streptococcus mitis_Q species 1 1,937 96 2
Streptococcus mitis_W species 1 1,722 100 2
Streptococcus mitis_Y species 1 1,872 97 1
Streptococcus mutans species 1 1,889 61 13
Streptococcus oralis species 1 1,791 84 0
Streptococcus oralis_AA species 1 1,972 95 10
Streptococcus oralis_AB species 1 1,922 91 2
Streptococcus oralis_AC species 1 1,941 113 2
Streptococcus oralis_AD species 1 1,827 82 0
Streptococcus oralis_B species 1 1,848 92 2
Streptococcus oralis_BA species 1 1,973 142 1
Streptococcus oralis_BC species 1 1,905 89 3
Streptococcus oralis_BD species 1 2,080 121 31
Streptococcus oralis_BE species 1 1,829 91 3
Streptococcus oralis_BF species 1 1,904 82 1
Streptococcus oralis_BG species 1 1,768 85 2
Streptococcus oralis_BH species 1 1,917 77 3
Streptococcus oralis_BI species 1 1,922 108 2
Streptococcus oralis_BJ species 1 1,861 98 3
Streptococcus oralis_BK species 1 1,887 66 1
Streptococcus oralis_BL species 1 2,489 134 207
Streptococcus oralis_BM species 1 1,937 100 9
Streptococcus oralis_BN species 1 1,719 92 0
Streptococcus oralis_BO species 1 1,799 81 1
Streptococcus oralis_BP species 1 2,530 134 12
Streptococcus oralis_BQ species 1 1,859 74 0
Streptococcus oralis_BR species 1 1,848 88 0
Streptococcus oralis_BS species 1 1,966 95 3
Streptococcus oralis_BT species 1 1,813 75 4
Streptococcus oralis_BU species 1 1,883 85 3
Streptococcus oralis_C species 1 2,109 124 2
Streptococcus oralis_D species 1 1,849 76 2
Streptococcus oralis_E species 1 2,152 120 4
Streptococcus oralis_F species 1 1,818 58 1
Streptococcus oralis_G species 1 1,812 85 0
Streptococcus oralis_H species 1 1,848 84 1
Streptococcus oralis_I species 1 2,101 120 2
Streptococcus oralis_J species 1 1,880 108 1
Streptococcus oralis_K species 1 2,077 142 53
Streptococcus oralis_L species 1 1,865 84 1
Streptococcus oralis_M species 1 1,742 73 1
Streptococcus oralis_N species 1 1,916 111 0
Streptococcus oralis_O species 1 2,074 136 9
Streptococcus oralis_Q species 1 1,997 129 21
Streptococcus oralis_R species 1 1,909 81 4
Streptococcus oralis_S species 1 1,929 103 0
Streptococcus oralis_T species 1 1,776 66 3
Streptococcus oralis_U species 1 1,863 90 0
Streptococcus oralis_V species 1 1,799 80 1
Streptococcus oralis_W species 1 1,767 61 2
Streptococcus oralis_X species 1 1,858 86 6
Streptococcus oralis_Y species 1 1,995 96 1
Streptococcus oralis_Z species 1 1,888 88 1
Streptococcus oricebi species 1 2,048 63 51
Streptococcus orisasini species 1 2,146 54 17
Streptococcus oriscaviae species 1 2,143 79 26
Streptococcus orisratti species 1 2,351 89 31
Streptococcus ovis species 1 2,370 104 45
Streptococcus ovuberis species 1 2,310 66 64
Streptococcus pacificus species 1 1,515 33 5
Streptococcus panodentis species 1 2,609 177 50
Streptococcus pantholopis species 1 2,018 59 17
Streptococcus parasanguinis species 1 1,982 90 5
Streptococcus parasanguinis_A species 1 2,135 117 5
Streptococcus parasanguinis_B species 1 1,958 93 3
Streptococcus parasanguinis_C species 1 1,976 103 4
Streptococcus parasanguinis_D species 1 2,038 115 7
Streptococcus parasanguinis_E species 1 1,922 86 1
Streptococcus parasanguinis_F species 1 2,004 98 3
Streptococcus parasanguinis_G species 1 2,031 104 7
Streptococcus parasanguinis_H species 1 2,106 119 4
Streptococcus parasanguinis_I species 1 2,156 138 4
Streptococcus parasanguinis_J species 1 2,061 104 4
Streptococcus parasanguinis_K species 1 1,773 70 4
Streptococcus parasanguinis_L species 1 2,042 112 6
Streptococcus parasanguinis_M species 1 2,019 107 4
Streptococcus parasanguinis_N species 1 1,833 77 3
Streptococcus parasanguinis_O species 1 1,932 97 0
Streptococcus parasanguinis_P species 1 1,879 99 2
Streptococcus parasuis species 1 2,130 97 12
Streptococcus parauberis species 1 2,129 75 35
Streptococcus pasteurianus species 1 2,054 69 9
Streptococcus penaeicida species 1 2,155 69 13
Streptococcus peroris species 1 1,606 57 1
Streptococcus pharyngis species 1 1,490 44 31
Streptococcus phocae species 1 1,719 92 45
Streptococcus pluranimalium species 1 2,009 87 28
Streptococcus plurextorum species 1 2,088 82 35
Streptococcus pneumoniae species 1 2,091 116 3
Streptococcus pneumoniae_A species 1 1,986 101 3
Streptococcus pneumoniae_B species 1 2,015 115 2
Streptococcus pneumoniae_C species 1 2,213 149 4
Streptococcus pneumoniae_E species 1 2,038 122 4
Streptococcus porci species 1 2,302 121 30
Streptococcus porcinus species 1 1,941 61 15
Streptococcus porcinus_A species 1 2,053 74 9
Streptococcus pseudopneumoniae species 1 2,199 156 5
Streptococcus pseudopneumoniae_A species 1 1,740 77 3
Streptococcus pseudopneumoniae_C species 1 2,054 147 2
Streptococcus pseudopneumoniae_D species 1 2,078 133 3
Streptococcus pseudopneumoniae_E species 1 1,866 95 3
Streptococcus pseudopneumoniae_G species 1 2,070 120 2
Streptococcus pseudopneumoniae_H species 1 2,115 135 10
Streptococcus pseudopneumoniae_J species 1 2,087 148 7
Streptococcus pseudopneumoniae_L species 1 1,894 104 5
Streptococcus pseudopneumoniae_M species 1 2,031 109 4
Streptococcus pseudopneumoniae_N species 1 2,001 112 1
Streptococcus pseudopneumoniae_P species 1 1,767 84 2
Streptococcus pseudoporcinus species 1 1,988 49 7
Streptococcus pyogenes species 1 1,899 118 35
Streptococcus ratti species 1 1,948 48 18
Streptococcus respiraculi species 1 1,939 84 11
Streptococcus rubneri species 1 1,983 90 4
Streptococcus ruminantium species 1 1,898 79 26
Streptococcus salivarius species 1 1,992 123 9
Streptococcus saliviloxodontae species 1 1,890 58 16
Streptococcus sanguinis species 1 2,180 113 3
Streptococcus sanguinis_A species 1 2,248 129 6
Streptococcus sanguinis_C species 1 2,218 125 9
Streptococcus sanguinis_D species 1 2,217 109 11
Streptococcus sanguinis_E species 1 2,331 130 8
Streptococcus sanguinis_F species 1 2,206 114 3
Streptococcus sanguinis_G species 1 2,234 110 9
Streptococcus sanguinis_H species 1 2,246 116 4
Streptococcus sanguinis_I species 1 2,347 139 13
Streptococcus sanguinis_J species 1 2,338 135 8
Streptococcus shenyangsis species 1 1,877 107 1
Streptococcus sinensis species 1 1,982 105 15
Streptococcus sobrinus species 1 2,045 91 36
Streptococcus sp000187445 species 1 1,998 109 69
Streptococcus sp000187745 species 1 2,108 119 5
Streptococcus sp000220065 species 1 1,923 67 21
Streptococcus sp000235485 species 1 1,804 80 2
Streptococcus sp000259505 species 1 1,791 82 1
Streptococcus sp000314795 species 1 2,140 120 5
Streptococcus sp000411475 species 1 1,654 68 1
Streptococcus sp000448565 species 1 2,228 169 9
Streptococcus sp000831085 species 1 2,222 123 19
Streptococcus sp001182825 species 1 1,886 62 50
Streptococcus sp001553685 species 1 2,005 109 2
Streptococcus sp001556435 species 1 2,223 121 41
Streptococcus sp001578805 species 1 2,073 96 59
Streptococcus sp001578875 species 1 1,621 51 40
Streptococcus sp001578885 species 1 1,591 36 25
Streptococcus sp001650315 species 1 1,837 101 0
Streptococcus sp001808705 species 1 2,086 115 3
Streptococcus sp001810785 species 1 1,826 99 1
Streptococcus sp001811505 species 1 2,041 120 5
Streptococcus sp001813295 species 1 2,149 134 8
Streptococcus sp001813675 species 1 2,084 117 8
Streptococcus sp001814775 species 1 1,978 99 3
Streptococcus sp001937065 species 1 1,997 66 16
Streptococcus sp002355895 species 1 1,828 99 2
Streptococcus sp002436115 species 1 1,677 38 97
Streptococcus sp003428885 species 1 1,863 86 3
Streptococcus sp003521145 species 1 1,798 130 21
Streptococcus sp004166885 species 1 1,882 99 9
Streptococcus sp004569635 species 1 2,135 106 33
Streptococcus sp004570525 species 1 1,943 71 57
Streptococcus sp007859205 species 1 1,217 31 17
Streptococcus sp008727815 species 1 2,003 97 4
Streptococcus sp011038795 species 1 2,003 90 24
Streptococcus sp012843315 species 1 2,045 136 11
Streptococcus sp013276505 species 1 1,782 74 2
Streptococcus sp013276795 species 1 1,843 95 0
Streptococcus sp013277415 species 1 1,966 121 2
Streptococcus sp013277515 species 1 1,949 116 3
Streptococcus sp013394695 species 1 1,678 55 1
Streptococcus sp013623465 species 1 1,887 77 10
Streptococcus sp015256435 species 1 1,981 104 1
Streptococcus sp015594605 species 1 1,963 54 31
Streptococcus sp016458205 species 1 1,950 100 55
Streptococcus sp019414905 species 1 1,869 120 5
Streptococcus sp019414935 species 1 1,656 72 3
Streptococcus sp019448285 species 1 1,904 95 3
Streptococcus sp020089495 species 1 1,938 115 0
Streptococcus sp023115445 species 1 1,950 106 4
Streptococcus sp024295625 species 1 1,961 84 1
Streptococcus sp024295825 species 1 2,074 116 1
Streptococcus sp024814375 species 1 1,654 56 28
Streptococcus sp900104285 species 1 1,848 80 2
Streptococcus sp900546335 species 1 1,685 72 8
Streptococcus sp900550895 species 1 1,792 84 1
Streptococcus sp900555155 species 1 1,718 85 77
Streptococcus sp900755085 species 1 1,880 101 8
Streptococcus sp900766505 species 1 2,000 112 5
Streptococcus sp901875575 species 1 1,887 111 4
Streptococcus sp902363395 species 1 1,897 121 3
Streptococcus sp902373455 species 1 1,418 84 4
Streptococcus sp902460355 species 1 1,967 102 3
Streptococcus sp902461025 species 1 1,697 83 3
Streptococcus sp902729355 species 1 2,342 88 40
Streptococcus sp902836505 species 1 1,564 88 10
Streptococcus sp903645285 species 1 1,847 106 1
Streptococcus sp905221035 species 1 1,823 95 2
Streptococcus sp905221065 species 1 1,840 89 1
Streptococcus sp905221085 species 1 1,891 102 6
Streptococcus sp905221095 species 1 1,872 134 4
Streptococcus sp905221105 species 1 1,713 85 6
Streptococcus sp905221115 species 1 1,923 126 12
Streptococcus sp905221125 species 1 1,938 157 3
Streptococcus sp905221145 species 1 1,798 92 1
Streptococcus sp905221155 species 1 2,026 118 7
Streptococcus sp905221165 species 1 1,845 114 4
Streptococcus sp905221195 species 1 1,875 102 14
Streptococcus sp905221205 species 1 1,796 84 4
Streptococcus sp905221215 species 1 1,919 138 4
Streptococcus sp905221225 species 1 1,760 81 2
Streptococcus sp905221235 species 1 2,148 143 22
Streptococcus sp905221245 species 1 1,949 124 1
Streptococcus sp905221255 species 1 1,813 87 2
Streptococcus sp905221295 species 1 1,881 99 5
Streptococcus sp905221305 species 1 1,787 100 0
Streptococcus sp905221325 species 1 2,123 201 17
Streptococcus sp905221335 species 1 1,834 137 8
Streptococcus sp905221345 species 1 1,959 146 14
Streptococcus sp905221355 species 1 1,985 106 9
Streptococcus sp905221365 species 1 1,990 168 10
Streptococcus sp905221375 species 1 2,071 150 8
Streptococcus sp905221385 species 1 1,950 103 3
Streptococcus sp905221415 species 1 1,987 123 2
Streptococcus sp905221435 species 1 1,968 115 4
Streptococcus sp905221455 species 1 1,971 139 8
Streptococcus sp905221505 species 1 1,943 119 3
Streptococcus sp905221545 species 1 1,771 82 3
Streptococcus sp905371745 species 1 1,707 85 0
Streptococcus sp905372115 species 1 2,263 118 15
Streptococcus sp905372925 species 1 1,725 80 0
Streptococcus sp905373305 species 1 1,579 92 0
Streptococcus sp915063165 species 1 1,500 77 2
Streptococcus sp915066115 species 1 1,840 99 2
Streptococcus sp916048115 species 1 1,181 50 3
Streptococcus sp916048145 species 1 1,360 84 6
Streptococcus sp916439135 species 1 1,303 69 6
Streptococcus sp916439305 species 1 1,615 88 8
Streptococcus sp927910965 species 1 2,291 158 12
Streptococcus sp934196125 species 1 1,778 84 20
Streptococcus sp934201655 species 1 1,764 108 12
Streptococcus sp934215455 species 1 1,699 85 3
Streptococcus sp934216185 species 1 2,113 133 10
Streptococcus sp934229725 species 1 1,878 107 17
Streptococcus sp943736975 species 1 1,762 63 6
Streptococcus sp943912555 species 1 1,836 109 7
Streptococcus sp943914425 species 1 1,754 112 2
Streptococcus sp945864085 species 1 1,804 75 13
Streptococcus sp945876895 species 1 1,651 46 40
Streptococcus suis species 1 1,858 77 4
Streptococcus suis_AA species 1 2,032 69 14
Streptococcus suis_AB species 1 2,300 112 14
Streptococcus suis_AC species 1 2,121 103 27
Streptococcus suis_AD species 1 2,049 88 16
Streptococcus suis_F species 1 2,471 159 21
Streptococcus suis_I species 1 2,285 129 16
Streptococcus suis_L species 1 2,186 124 22
Streptococcus suis_O species 1 2,518 153 32
Streptococcus suis_P species 1 2,564 174 22
Streptococcus suis_R species 1 2,316 119 13
Streptococcus suis_S species 1 2,101 108 8
Streptococcus suis_T species 1 2,104 113 11
Streptococcus suis_U species 1 2,847 206 39
Streptococcus suis_V species 1 2,157 82 29
Streptococcus suis_W species 1 2,031 93 6
Streptococcus suis_X species 1 1,912 88 8
Streptococcus suis_Y species 1 2,405 145 16
Streptococcus suis_Z species 1 2,043 103 15
Streptococcus symci species 1 2,037 91 2
Streptococcus thermophilus species 1 2,250 172 25
Streptococcus thoraltensis species 1 2,210 104 33
Streptococcus timonensis species 1 1,973 111 6
Streptococcus toyakuensis species 1 1,964 104 1
Streptococcus troglodytae species 1 2,091 93 16
Streptococcus uberis species 1 1,919 62 16
Streptococcus uberis_A species 1 2,328 66 21
Streptococcus urinalis species 1 2,210 90 36
Streptococcus varani species 1 2,475 119 42
Streptococcus vestibularis species 1 1,806 123 11
Streptococcus vicugnae species 1 1,877 69 6
Streptococcus vulneris species 1 1,852 93 6
Streptococcus xiaochunlingii species 1 1,879 91 2
Streptococcus zalophi species 1 1,447 25 6