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Hierarchical exploration of TRG genes through taxonomy of Bacteria

Taxon name Taxon rank Species (n) Proteins (n) TRG genus (n) TRG species (n) Details
21-64-14 order 2 5,717 249 0
AKS1 order 2 5,395 24 142
Acidiferrobacterales order 51 138,515 3,111 3,032
Acidithiobacillales order 30 85,274 1,569 2,752
AqS2 order 3 5,366 457 0
AqS3 order 1 2,521 444 0
Arenicellales order 78 219,526 5,169 5,530
Arenicellales_A order 1 1,416 50 0
BM003 order 1 3,552 150 0
BQJM01 order 1 1,572 235 0
BW-2 order 3 9,050 181 200
Beggiatoales order 30 123,547 2,992 4,756
Berkiellales order 11 25,498 2,025 1,357
Burkholderiales order 4,020 15,521,779 193,335 255,888
CACEW01 order 2 3,228 589 0
CACJXQ01 order 2 3,365 38 59
CAIQBE01 order 4 7,126 158 816
CAIRSR01 order 2 6,100 105 427
CAISUE01 order 4 7,099 620 305
CAJQNE01 order 1 3,449 230 0
CAJXQU01 order 1 2,592 65 0
CAKKRP01 order 1 3,133 126 0
CALZJG01 order 3 8,386 136 123
CAMCUU01 order 1 1,825 291 0
Cardiobacteriales order 26 55,797 1,764 959
Chromatiales order 166 645,939 10,589 19,804
Comchoanobacterales order 16 18,425 1,895 1,824
Competibacterales order 44 152,493 1,765 3,384
Coxiellales order 32 51,943 4,562 2,934
DRJJ01 order 1 2,862 120 0
DRLM01 order 1 2,512 52 0
DRMK01 order 6 13,434 138 275
DSM-100275 order 1 2,485 27 0
DSM-16500 order 38 74,369 3,230 4,276
DSM-19610 order 11 32,257 231 696
DSM-26407 order 1 3,827 108 0
DTRM01 order 1 2,123 81 0
Diplorickettsiales order 11 18,060 1,274 732
Ectothiorhodospirales order 48 134,500 1,431 2,066
Ectothiorhodospirales_A order 4 13,399 287 259
Enterobacterales order 848 2,989,239 29,823 34,400
Enterobacterales_A order 1,276 4,613,416 83,492 74,698
Enterobacterales_B order 1 3,686 210 0
Evansiales order 2 588 13 0
Francisellales order 33 69,968 2,633 1,652
GCA-001735895 order 24 86,645 925 2,688
GCA-002705445 order 33 35,516 532 253
GCA-013348725 order 1 2,810 53 0
GCA-2400775 order 5 9,382 172 235
GCA-2729495 order 29 77,718 551 1,742
GCF-002020875 order 5 11,264 249 369
GCF-013343005 order 1 3,649 218 0
GRL18 order 11 37,451 731 1,073
Ga0077536 order 27 102,099 1,086 2,442
Ga0077536_A order 1 2,047 209 0
Ga0077554 order 7 17,967 101 513
Granulosicoccales order 14 64,181 998 2,206
HK1 order 15 63,398 2,081 1,115
HP12 order 1 4,318 440 0
HTCC5015 order 4 9,167 340 0
Halothiobacillales order 25 60,809 596 1,725
Immundisolibacterales order 8 20,738 203 485
J025 order 1 3,649 602 0
J044 order 2 5,795 187 0
J048 order 1 2,140 55 0
J113 order 1 2,165 69 0
JAABTG01 order 2 5,979 176 0
JAADGQ01 order 3 7,390 108 70
JAADHQ01 order 2 4,710 23 155
JAADHS01 order 3 11,556 860 0
JAADJB01 order 1 2,334 52 0
JAAEPA01 order 1 5,516 640 0
JAAOII01 order 1 1,296 136 0
JABABF01 order 1 1,738 210 0
JABCZS01 order 3 5,062 335 347
JABDGN01 order 3 3,872 390 0
JABDKV01 order 3 8,813 140 94
JABDLF01 order 1 2,047 66 0
JABDMI01 order 2 4,323 40 88
JABHGC01 order 2 7,443 479 0
JABURT01 order 2 4,823 21 169
JABXHR01 order 1 3,563 224 0
JACCXJ01 order 2 8,052 678 0
JACCYU01 order 2 6,567 81 267
JACDCP01 order 1 2,973 139 0
JACKNK01 order 2 5,587 52 157
JACQPQ01 order 1 1,452 101 0
JACREF01 order 1 2,134 55 0
JADJWH01 order 4 11,078 126 198
JADZEE01 order 1 4,529 92 0
JAFEDO01 order 1 2,151 275 0
JAFLJP01 order 2 5,449 27 163
JAGOUN01 order 3 5,123 175 426
JAGOUU01 order 1 1,685 240 0
JAGRCI01 order 1 4,158 138 0
JAGRGH01 order 1 3,185 141 0
JAHEKG01 order 1 3,535 109 0
JAHELT01 order 1 5,246 196 0
JAHFRR01 order 1 1,429 174 0
JAHJQQ01 order 4 12,084 63 285
JAHRAO01 order 1 1,386 59 0
JAIVGZ01 order 1 1,887 44 0
JAJDOJ01 order 1 3,743 219 0
JAJDYQ01 order 1 1,975 124 0
JAJFJF01 order 1 1,908 276 0
JAJFKG01 order 2 3,999 393 0
JAJFKO01 order 1 2,588 340 0
JAJPIJ01 order 3 9,352 116 203
JAJYDF01 order 1 3,061 512 0
JAKBBU01 order 2 4,027 422 0
LLD-282 order 2 2,593 76 563
Legionellales order 122 337,756 8,156 10,895
Legionellales_A order 1 480 4 0
M30B25 order 1 1,280 231 0
Methylococcales order 234 787,840 10,692 22,779
MnTg04 order 3 6,995 101 164
Nevskiales order 67 234,109 3,507 4,756
Nitrococcales order 49 134,560 1,919 2,116
Nitrosococcales order 50 122,158 1,201 2,523
PIVX01 order 2 5,823 388 1,470
PIWD01 order 1 1,544 395 0
PS1 order 69 102,037 1,237 2,329
PWYM01 order 5 16,016 160 234
Piscirickettsiales order 3 10,359 1,264 784
Porisulfidales order 4 5,996 282 0
Pseudomonadales order 2,563 10,131,295 213,291 131,154
Pseudomonadales_A order 13 30,969 1,512 1,867
QNFE01 order 1 2,150 130 0
QNFN01 order 2 5,140 45 128
QQUJ01 order 1 3,734 138 0
QZLD01 order 2 5,090 254 0
RBG-16-57-12 order 1 2,030 90 0
REEB76 order 5 10,607 160 251
RI-283 order 1 2,053 50 0
RKRP01 order 5 12,511 133 222
RKSB01 order 1 1,584 99 0
S012-40 order 3 10,329 423 0
S140-43 order 1 2,279 83 0
S141-70 order 1 1,983 78 0
S144-34 order 2 5,174 89 110
SAR86 order 193 225,566 2,119 1,497
SG8-11 order 5 17,848 245 646
SKWO01 order 1 1,647 23 0
SLND01 order 4 9,139 121 166
SMWH01 order 1 1,550 63 0
SURF-13 order 4 6,901 34 130
SZUA-140 order 3 7,176 58 188
SZUA-146 order 2 6,232 36 416
SZUA-152 order 18 58,490 1,170 1,363
SZUA-21 order 2 7,262 622 0
SZUA-229 order 27 69,562 714 1,676
SZUA-76 order 9 23,642 331 583
SpSt-1174 order 2 4,988 43 54
Steroidobacterales order 163 563,587 7,937 10,286
Tenderiales order 8 23,210 352 298
Thiohalobacterales order 3 8,908 56 123
Thiohalomonadales order 12 39,438 835 626
Thiohalorhabdales order 2 4,691 171 0
Thiohalospirales order 1 2,663 86 0
Thiomicrospirales order 57 121,676 1,473 2,058
Thiotrichales order 43 138,400 2,275 3,594
UBA1113 order 16 31,030 1,985 1,279
UBA11654 order 10 14,282 175 112
UBA12402 order 8 12,099 1,231 177
UBA2770 order 11 19,625 439 461
UBA4486 order 40 98,253 1,404 1,943
UBA4575 order 8 15,201 293 416
UBA5335 order 9 20,690 332 434
UBA5859 order 1 2,731 117 0
UBA5861 order 2 6,468 60 116
UBA6002 order 5 10,887 1,447 453
UBA6186 order 11 18,276 1,272 1,118
UBA6429 order 21 61,308 1,291 876
UBA6522 order 18 55,389 671 930
UBA6729 order 2 3,041 252 0
UBA6915 order 1 3,591 161 0
UBA7366 order 1 2,021 367 0
UBA7966 order 2 4,461 70 133
UBA9214 order 9 22,071 110 782
UBA9339 order 9 13,089 1,150 434
UWMA-0217 order 3 9,300 542 0
VBWC01 order 2 5,896 114 159
WFUO01 order 1 1,763 64 0
WLWR01 order 1 1,672 178 0
Woeseiales order 70 200,768 1,318 4,031
XJ16 order 3 8,978 136 135
XN24 order 5 14,569 93 301
Xanthomonadales order 778 2,621,388 33,718 41,586