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Hierarchical exploration of TRG genes through taxonomy of Bacteria

Taxon name Taxon rank Species (n) Proteins (n) TRG genus (n) TRG species (n) Details
14-2 genus 38 137,191 910 2,180
1XD42-69 genus 15 44,261 234 774
1XD8-76 genus 9 32,401 120 536
AC2028 genus 30 70,638 520 639
AF33-28 genus 1 4,396 82 0
Acetatifactor genus 126 386,020 3,098 6,678
Acetitomaculum genus 1 2,644 70 0
Agathobacter genus 38 89,994 651 1,289
Alectryocaccobium genus 7 14,518 61 250
An181 genus 2 4,909 0 84
Anaerobium genus 1 4,012 139 0
Anaerobutyricum genus 24 61,877 844 1,251
Anaerocolumna genus 18 82,200 534 1,461
Anaerosacchariphilus genus 1 3,629 113 0
Anaerosporobacter genus 4 16,655 192 282
Anaerostipes genus 18 49,873 673 615
Avilachnospira genus 20 34,831 214 456
Bacteroides_F genus 2 5,250 66 45
Bariatricus genus 10 26,987 94 321
Bilifractor genus 23 55,149 412 1,385
Blautia genus 29 94,367 661 953
Blautia_A genus 87 260,200 1,945 4,009
Butyribacter genus 40 117,163 1,706 2,451
Butyrivibrio genus 77 240,789 4,313 3,507
Butyrivibrio_A genus 9 20,041 246 298
C-53 genus 1 3,917 78 0
CAG-194 genus 8 17,062 127 183
CAG-303 genus 16 37,635 346 1,146
CAG-317 genus 5 13,456 13 151
CAG-411 genus 7 19,535 382 602
CAG-45 genus 3 9,430 54 124
CAG-510 genus 12 32,326 156 407
CAG-56 genus 6 16,018 38 260
CAG-590 genus 27 71,858 875 1,507
CAG-603 genus 13 32,598 370 750
CAG-632 genus 9 21,538 281 376
CAG-791 genus 52 126,815 1,072 2,609
CAG-882 genus 6 15,525 224 206
CAG-95 genus 41 145,135 671 2,048
CAJJNI01 genus 1 2,456 70 0
CAJMNU01 genus 1 1,926 43 0
CAKAHY01 genus 1 3,816 544 0
CAKQHB01 genus 1 2,296 52 0
CAKRHR01 genus 2 5,521 5 90
CAKRJP01 genus 1 2,441 20 0
CALWPC01 genus 1 1,832 45 0
CALWPY01 genus 1 2,063 28 0
CALZKI01 genus 1 1,732 36 0
CAMBRQ01 genus 1 2,393 32 0
CHH4-2 genus 3 15,891 136 258
COE1 genus 38 137,482 1,607 2,359
Caccomorpha genus 3 7,599 78 165
Caccovicinus genus 10 35,775 144 544
Catenibacillus genus 6 20,840 127 306
Catonella genus 8 24,199 624 579
Choladocola genus 29 97,449 637 1,137
Choladousia genus 32 98,422 940 2,025
Clostridium_AI genus 4 13,992 112 477
Clostridium_AP genus 2 7,391 24 71
Clostridium_N genus 2 7,615 5 280
Clostridium_Q genus 14 51,509 526 781
Clostridium_R genus 6 13,476 120 205
Coprococcus genus 17 39,158 589 433
Coprococcus_A genus 3 9,111 66 145
Copromonas genus 22 59,883 421 777
Cuneatibacter genus 1 3,199 97 0
Diplocloster genus 2 9,843 81 154
Dorea genus 2 4,695 3 44
Dorea_A genus 8 20,099 59 186
Dorea_B genus 1 2,305 17 0
Dorea_C genus 3 8,024 30 147
Egerieimonas genus 2 4,681 13 56
Egerieimonas_A genus 3 7,784 62 77
Eisenbergiella genus 26 90,629 633 1,270
Enterocloster genus 31 133,658 947 1,814
Eubacterium_C genus 4 8,743 60 217
Eubacterium_F genus 45 110,895 2,199 1,806
Eubacterium_G genus 25 49,221 827 1,073
Eubacterium_I genus 31 70,741 652 1,019
Eubacterium_J genus 11 47,861 360 1,081
Eubacterium_Q genus 55 127,985 1,819 2,086
Eubacterium_S genus 1 2,431 104 0
Extibacter genus 4 14,996 83 231
F0428 genus 1 2,069 40 0
FD2005 genus 4 8,357 28 129
Faecalimonas genus 14 32,389 161 507
Falcatimonas genus 1 3,208 109 0
Fimimorpha genus 7 17,707 182 446
Fimousia genus 3 6,449 23 95
Frisingicoccus genus 7 17,572 96 232
Fusicatenibacter genus 7 18,806 148 313
G11 genus 3 7,007 36 37
HGM12545 genus 1 2,583 77 0
HGM12587 genus 2 6,172 25 133
Hespellia genus 1 4,139 91 0
Hominisplanchenecus genus 4 8,802 24 99
Hungatella genus 2 12,149 27 139
Hungatella_A genus 1 5,109 73 0
Hungatella_B genus 1 2,616 31 0
ISDg genus 22 43,659 1,102 598
JAAVZI01 genus 1 3,120 105 0
JAAWBX01 genus 1 2,283 51 0
JAAWJJ01 genus 1 3,077 70 0
JAAYNV01 genus 2 4,689 4 76
JAAYRG01 genus 1 2,240 48 0
JAAYYM01 genus 1 4,087 200 0
JAEEJA01 genus 4 8,468 54 260
JAEELB01 genus 2 4,559 37 106
JAEEOQ01 genus 1 2,393 51 0
JAEXAX01 genus 1 1,594 38 0
JAEYFP01 genus 1 4,058 43 0
JAEZWQ01 genus 1 1,393 41 0
JAFBIX01 genus 1 2,656 20 0
JAFBIY01 genus 1 2,299 12 0
JAGOGN01 genus 1 1,943 63 0
JAGPKJ01 genus 1 2,150 59 0
JAGTTR01 genus 4 10,009 67 140
JAGZHZ01 genus 3 7,995 53 131
JAHHTM01 genus 2 3,966 13 58
JAHZHG01 genus 1 3,240 63 0
JAILDL01 genus 2 5,135 48 67
JAILEN01 genus 6 13,053 79 209
JAILFK01 genus 3 6,237 26 118
JAILFQ01 genus 1 1,910 67 0
JAILHT01 genus 2 4,454 25 76
JAILLW01 genus 6 15,041 51 318
JAILNW01 genus 1 2,891 227 0
JAILPU01 genus 1 1,857 71 0
JAILQS01 genus 1 2,231 81 0
JAJEQR01 genus 1 3,610 79 0
JAKSRN01 genus 1 2,497 91 0
JAKSSA01 genus 1 1,640 42 0
JAKSSE01 genus 1 1,461 27 0
JAKSSF01 genus 1 2,207 35 0
JALENY01 genus 1 2,414 38 0
JALFVM01 genus 1 3,030 65 0
Johnsonella genus 4 9,578 153 232
KLE1615 genus 4 12,571 119 276
KM106-2 genus 9 28,989 331 624
Kineothrix genus 23 79,845 396 1,693
Lachnoanaerobaculum genus 10 28,036 837 276
Lachnobacterium genus 3 7,226 169 136
Lachnoclostridium genus 13 45,559 498 929
Lachnoclostridium_A genus 11 31,794 106 313
Lachnoclostridium_B genus 13 39,684 115 460
Lachnospira genus 31 74,019 1,077 1,079
Lachnotalea genus 3 11,952 54 223
Lacrimispora genus 34 162,585 1,801 1,666
Lactonifactor genus 2 8,968 61 106
Limivivens genus 5 16,267 40 244
Luxibacter genus 1 3,861 46 0
MD308 genus 7 25,093 97 362
MGBC100174 genus 1 3,023 97 0
MGBC111451 genus 1 2,660 96 0
MGBC114844 genus 3 10,046 116 278
MGBC120314 genus 3 7,086 70 163
MGBC131033 genus 1 3,349 141 0
MGBC136627 genus 1 3,854 213 0
MGBC140009 genus 1 2,752 49 0
MGBC143606 genus 1 2,774 46 0
MGBC164599 genus 5 16,885 128 250
MGBC165282 genus 1 3,221 115 0
Marvinbryantia genus 10 30,030 204 328
Massilistercora genus 3 7,723 9 56
Mediterraneibacter genus 64 169,750 993 1,780
Mediterraneibacter_A genus 3 7,129 0 109
Merdenecus genus 1 2,617 75 0
Merdimonas genus 4 10,339 15 68
Merdiplasma genus 6 14,294 64 289
Merdisoma genus 23 76,743 432 755
Mobilisporobacter genus 2 7,361 4 99
Mobilitalea genus 65 229,263 2,017 4,090
Muricomes genus 9 39,288 152 506
Murimonas genus 1 4,870 74 0
NC2004 genus 4 10,622 106 282
NK4A136 genus 31 85,546 1,232 1,562
NK4A144 genus 42 101,057 1,398 1,794
Novisyntrophococcus genus 5 15,619 41 239
Oliverpabstia genus 10 32,779 139 498
Onthocola_A genus 2 4,175 31 60
Oribacterium genus 27 67,218 1,208 1,006
Paralachnospira genus 13 33,194 305 358
Paralachnospira_A genus 4 12,834 113 201
Pararoseburia genus 5 10,915 43 131
Parasporobacterium genus 1 2,388 59 0
Porcincola genus 25 60,319 446 1,375
Pseudobutyrivibrio genus 29 79,907 1,129 974
Pseudolachnospira genus 3 9,291 56 102
Pullilachnospira genus 2 5,446 22 74
RGIG10340 genus 2 3,916 16 61
RGIG1588 genus 2 4,502 41 132
RGIG1668 genus 3 8,194 82 209
RGIG1934 genus 1 2,154 47 0
RGIG3002 genus 3 9,246 8 179
RGIG3040 genus 7 18,351 256 367
RGIG3528 genus 8 17,663 212 258
RGIG4034 genus 2 4,774 1 118
RGIG4057 genus 6 18,456 294 515
RGIG423 genus 5 11,511 60 249
RGIG4284 genus 4 11,482 13 153
RGIG4733 genus 1 1,573 16 0
RGIG4856 genus 1 3,048 70 0
RGIG4930 genus 6 12,442 101 373
RGIG5021 genus 1 2,909 82 0
RGIG5612 genus 13 27,661 180 517
RGIG5636 genus 1 1,971 34 0
RGIG6307 genus 11 26,883 268 421
RGIG6904 genus 1 2,038 61 0
RGIG6919 genus 2 4,671 1 88
RGIG7193 genus 7 19,588 114 260
RGIG7926 genus 7 16,211 158 212
RGIG8306 genus 1 2,512 90 0
RGIG8607 genus 3 7,885 14 121
RGIG8767 genus 2 3,617 3 50
RGIG989 genus 1 1,987 51 0
RUG11200 genus 3 6,032 13 232
RUG11204 genus 2 3,610 9 67
RUG11237 genus 3 7,908 55 191
RUG115 genus 8 21,801 68 329
RUG11623 genus 1 2,190 77 0
RUG11977 genus 26 64,275 949 1,156
RUG12461 genus 4 9,869 84 216
RUG12871 genus 2 4,572 66 114
RUG14243 genus 8 14,217 103 308
RUG14305 genus 1 2,342 128 0
RUG14319 genus 2 3,133 11 46
RUG147 genus 1 2,394 72 0
RUG191 genus 8 16,975 224 450
RUG306 genus 5 10,257 78 219
RUG842 genus 4 6,223 51 112
Robinsoniella genus 4 23,824 337 377
Roseburia genus 35 102,868 718 1,462
Roseburia_A genus 3 7,559 46 81
Ruminococcus_B genus 3 8,023 20 93
Ruminococcus_G genus 3 9,830 45 96
SFDP01 genus 9 22,543 100 526
SIG280 genus 2 4,407 11 66
SIG291 genus 1 2,113 64 0
SIG292 genus 2 5,158 10 93
SIG293 genus 3 9,001 198 248
SIG299 genus 5 14,132 89 296
SIG300 genus 2 4,530 16 69
SIG301 genus 2 4,553 71 266
SIG307 genus 10 26,328 381 346
SIG308 genus 2 4,555 10 192
SIG332 genus 4 9,284 4 126
SIG333 genus 2 5,659 4 170
SIG336 genus 3 6,932 11 137
SZUA-378 genus 4 13,728 58 280
SZUA-448 genus 4 11,708 92 312
Scatomonas genus 5 11,229 44 357
Schaedlerella genus 18 70,189 252 1,257
Scybalocola genus 2 4,677 1 68
Scybalomonas genus 3 8,405 104 185
Sellimonas genus 4 11,421 36 102
Shuttleworthia genus 1 1,903 64 0
Sporofaciens genus 13 56,551 275 655
Stomatobaculum genus 10 22,487 313 345
Suipraeoptans genus 1 2,614 66 0
TB5 genus 1 4,308 75 0
TWA4 genus 3 9,192 44 321
UBA1066 genus 38 87,821 756 1,954
UBA11774 genus 4 7,886 29 122
UBA11957 genus 7 16,267 109 310
UBA1201 genus 6 13,033 322 146
UBA1258 genus 17 39,126 310 429
UBA1267 genus 13 27,741 167 610
UBA1712 genus 20 42,927 272 588
UBA1729 genus 1 1,840 33 0
UBA1753 genus 4 9,022 45 189
UBA1755 genus 2 3,088 13 107
UBA1760 genus 1 2,086 50 0
UBA2821 genus 4 11,084 38 246
UBA2868 genus 43 105,032 951 1,619
UBA2882 genus 12 31,665 252 498
UBA2912 genus 6 12,633 27 266
UBA2942 genus 2 4,524 87 103
UBA3212 genus 2 3,789 9 69
UBA3282 genus 72 240,308 1,435 3,184
UBA3305 genus 7 17,044 127 298
UBA3402 genus 19 67,998 293 937
UBA3633 genus 9 14,013 759 779
UBA3766 genus 32 69,648 1,013 1,100
UBA3774 genus 5 8,512 40 156
UBA3775 genus 3 6,049 99 139
UBA4285 genus 12 19,679 248 368
UBA4292 genus 4 8,540 99 277
UBA5385 genus 1 3,610 44 0
UBA629 genus 6 10,232 19 228
UBA6987 genus 16 29,710 317 291
UBA7050 genus 6 17,283 135 396
UBA7109 genus 4 13,906 2 211
UBA933 genus 1 2,544 110 0
UBA935 genus 5 13,230 85 395
UBA9414 genus 3 7,966 30 105
UBA9722 genus 1 2,257 75 0
UBA9775 genus 1 1,655 69 0
UMGS1251 genus 1 4,407 70 0
UMGS1370 genus 8 24,482 125 192
UMGS2037 genus 4 8,752 61 109
V9D3004 genus 7 14,953 75 279
VSOB01 genus 11 28,743 84 397
Velocimicrobium genus 3 9,999 4 297
Ventrimonas genus 30 97,345 532 1,491
Ventrisoma genus 1 4,789 134 0
W0P33-017 genus 9 23,652 137 284
WRBB01 genus 1 2,255 77 0
Weimeria genus 10 21,307 146 502
Wujia genus 39 97,648 1,200 2,345
XBB1006 genus 8 15,330 230 272
XBB2008 genus 6 15,754 57 216
XBD2001 genus 4 8,127 56 101