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Hierarchical exploration of TRG genes through taxonomy of Bacteria
Taxon name | Taxon rank | Species (n) | Proteins (n) | TRG genus (n) | TRG species (n) | Details |
---|---|---|---|---|---|---|
1-19 | genus | 2 | 7,676 | 8 | 143 | |
ATCC-39006 | genus | 1 | 4,430 | 91 | 0 | |
Acerihabitans | genus | 6 | 31,612 | 317 | 827 | |
Affinibrenneria | genus | 1 | 5,159 | 115 | 0 | |
Annandia | genus | 2 | 641 | 0 | 10 | |
Arsenophonus | genus | 6 | 23,496 | 1,124 | 837 | |
Arsenophonus_A | genus | 1 | 633 | 0 | 0 | |
Arsenophonus_B | genus | 1 | 456 | 9 | 0 | |
Atlantibacter | genus | 5 | 22,062 | 87 | 193 | |
B14 | genus | 1 | 3,523 | 150 | 0 | |
BIGb0383 | genus | 1 | 4,615 | 37 | 0 | |
Baumannia | genus | 4 | 2,476 | 2 | 24 | |
Biostraticola | genus | 1 | 3,928 | 113 | 0 | |
Blochmannia | genus | 13 | 7,989 | 19 | 98 | |
Brenneria | genus | 9 | 37,695 | 128 | 894 | |
Buchnera | genus | 60 | 30,110 | 269 | 136 | |
Budvicia | genus | 2 | 8,154 | 23 | 208 | |
Buttiauxella | genus | 13 | 57,642 | 236 | 675 | |
CALYPF01 | genus | 1 | 3,955 | 151 | 0 | |
CALYQQ01 | genus | 1 | 2,022 | 50 | 0 | |
CWE | genus | 1 | 565 | 8 | 0 | |
Cedecea | genus | 10 | 45,481 | 153 | 397 | |
Chania | genus | 3 | 14,367 | 23 | 289 | |
Chimaeribacter | genus | 4 | 17,540 | 161 | 193 | |
Citrobacter | genus | 18 | 84,945 | 259 | 717 | |
Citrobacter_A | genus | 9 | 42,668 | 90 | 343 | |
Citrobacter_B | genus | 1 | 6,446 | 129 | 0 | |
Citrobacter_C | genus | 1 | 5,143 | 80 | 0 | |
CjNOSY1 | genus | 1 | 530 | 1 | 0 | |
Cronobacter | genus | 7 | 29,030 | 152 | 148 | |
Dickeya | genus | 11 | 44,803 | 268 | 672 | |
Doolittlea | genus | 1 | 662 | 85 | 0 | |
Ecksteinia | genus | 1 | 459 | 1 | 0 | |
Edaphovirga | genus | 1 | 4,686 | 156 | 0 | |
Edwardsiella | genus | 5 | 17,411 | 171 | 262 | |
Enterobacillus | genus | 1 | 4,257 | 90 | 0 | |
Enterobacter | genus | 39 | 176,573 | 386 | 830 | |
Enterobacter_A | genus | 1 | 3,858 | 24 | 0 | |
Enterobacter_B | genus | 2 | 8,892 | 15 | 56 | |
Enterobacter_D | genus | 4 | 16,806 | 22 | 106 | |
Entomohabitans | genus | 1 | 5,139 | 100 | 0 | |
Erwinia | genus | 32 | 136,920 | 767 | 2,747 | |
Erwinia_B | genus | 1 | 4,048 | 63 | 0 | |
Escherichia | genus | 10 | 44,208 | 243 | 447 | |
Ewingella | genus | 4 | 17,054 | 23 | 446 | |
FFU | genus | 1 | 904 | 119 | 0 | |
Franconibacter | genus | 2 | 8,495 | 15 | 62 | |
Frischella | genus | 2 | 4,664 | 11 | 63 | |
Fukatsuia | genus | 1 | 3,246 | 231 | 0 | |
GBBU | genus | 1 | 468 | 1 | 0 | |
GCA-001602625 | genus | 1 | 2,660 | 636 | 0 | |
GCA-012562765 | genus | 24 | 10,034 | 17 | 25 | |
GCA-022846635 | genus | 1 | 3,852 | 82 | 0 | |
GCF-000287335 | genus | 1 | 925 | 225 | 0 | |
GCF-000287355 | genus | 1 | 584 | 16 | 0 | |
GCF-900161835 | genus | 1 | 798 | 191 | 0 | |
Gibbsiella | genus | 1 | 4,904 | 69 | 0 | |
Gillettellia | genus | 1 | 708 | 77 | 0 | |
Gilliamella | genus | 31 | 72,833 | 1,523 | 606 | |
Gullanella | genus | 1 | 484 | 4 | 0 | |
Hafnia | genus | 4 | 18,198 | 153 | 235 | |
Hamiltonella | genus | 2 | 3,379 | 88 | 212 | |
Hartigia | genus | 1 | 747 | 41 | 0 | |
Hoaglandella | genus | 1 | 532 | 7 | 0 | |
Intestinirhabdus | genus | 1 | 4,452 | 75 | 0 | |
Ishikawaella | genus | 1 | 628 | 6 | 0 | |
Izhakiella | genus | 3 | 11,648 | 43 | 267 | |
JAATFO01 | genus | 1 | 3,892 | 109 | 0 | |
JAHCVB01 | genus | 1 | 891 | 91 | 0 | |
JGM124 | genus | 2 | 8,580 | 26 | 166 | |
Jejubacter | genus | 1 | 4,730 | 68 | 0 | |
Klebsiella | genus | 20 | 103,224 | 514 | 786 | |
Kluyvera | genus | 11 | 52,962 | 167 | 663 | |
Kosakonia | genus | 15 | 78,472 | 530 | 1,098 | |
Leclercia | genus | 7 | 35,793 | 68 | 316 | |
Lelliottia | genus | 8 | 35,460 | 43 | 300 | |
Leminorella | genus | 2 | 7,361 | 31 | 102 | |
Limnobaculum | genus | 5 | 19,261 | 149 | 221 | |
Lonsdalea | genus | 5 | 17,321 | 145 | 313 | |
Mangrovibacter | genus | 3 | 13,989 | 115 | 184 | |
Mikella | genus | 2 | 530 | 1 | 6 | |
Mixta | genus | 8 | 32,965 | 187 | 339 | |
Moellerella | genus | 1 | 2,889 | 52 | 0 | |
Moranella | genus | 1 | 444 | 11 | 0 | |
Morganella | genus | 7 | 27,486 | 630 | 360 | |
Musicola | genus | 1 | 4,079 | 80 | 0 | |
Nardonella | genus | 4 | 857 | 0 | 30 | |
Orbus | genus | 1 | 2,112 | 33 | 0 | |
PD-1 | genus | 1 | 4,455 | 58 | 0 | |
PRUG | genus | 1 | 563 | 10 | 0 | |
Pantoea | genus | 56 | 253,699 | 2,662 | 3,423 | |
Pantoea_A | genus | 1 | 834 | 9 | 0 | |
Pectobacterium | genus | 21 | 91,584 | 866 | 927 | |
Phaseolibacter | genus | 1 | 2,434 | 128 | 0 | |
Photorhabdus | genus | 15 | 69,526 | 1,597 | 933 | |
Phytobacter | genus | 5 | 24,867 | 70 | 309 | |
Plesiomonas | genus | 1 | 2,928 | 117 | 0 | |
Pluralibacter | genus | 2 | 9,718 | 9 | 84 | |
Pragia | genus | 1 | 3,369 | 43 | 0 | |
Proteus | genus | 20 | 73,803 | 1,282 | 340 | |
Providencia | genus | 15 | 60,515 | 570 | 523 | |
Providencia_A | genus | 1 | 636 | 5 | 0 | |
Providencia_B | genus | 1 | 3,305 | 83 | 0 | |
Providencia_C | genus | 3 | 12,901 | 57 | 175 | |
Providencia_D | genus | 1 | 3,913 | 57 | 0 | |
Pseudescherichia | genus | 4 | 16,287 | 48 | 92 | |
Pseudocitrobacter | genus | 4 | 18,503 | 77 | 167 | |
Purcelliella | genus | 1 | 438 | 3 | 0 | |
RHBSTW-00994 | genus | 1 | 4,556 | 31 | 0 | |
Rahnella | genus | 15 | 74,437 | 574 | 764 | |
Regiella | genus | 1 | 2,342 | 193 | 0 | |
Riesia | genus | 2 | 999 | 3 | 38 | |
Rosenbergiella | genus | 6 | 18,890 | 201 | 262 | |
Rouxiella | genus | 6 | 27,888 | 219 | 459 | |
SZZU01 | genus | 1 | 891 | 3 | 0 | |
Salmonella | genus | 5 | 21,702 | 106 | 268 | |
Samsonia | genus | 1 | 3,496 | 64 | 0 | |
Scandinavium | genus | 7 | 31,508 | 115 | 285 | |
Schmidhempelia | genus | 1 | 1,952 | 33 | 0 | |
Schneideria | genus | 1 | 543 | 2 | 0 | |
Serratia | genus | 13 | 62,616 | 275 | 241 | |
Serratia_A | genus | 5 | 25,477 | 68 | 446 | |
Serratia_B | genus | 2 | 10,284 | 27 | 107 | |
Serratia_C | genus | 1 | 498 | 0 | 0 | |
Serratia_D | genus | 1 | 739 | 27 | 0 | |
Serratia_E | genus | 1 | 693 | 25 | 0 | |
Serratia_F | genus | 2 | 10,044 | 31 | 157 | |
Serratia_G | genus | 1 | 2,848 | 75 | 0 | |
Serratia_H | genus | 1 | 1,475 | 736 | 0 | |
Serratia_I | genus | 4 | 10,702 | 239 | 578 | |
Serratia_J | genus | 10 | 49,939 | 220 | 444 | |
Shimwellia | genus | 2 | 7,785 | 11 | 80 | |
Siccibacter | genus | 2 | 7,868 | 7 | 58 | |
SoCistrobi | genus | 1 | 3,631 | 236 | 0 | |
SoEE | genus | 5 | 3,509 | 7 | 12 | |
Sodalis | genus | 1 | 5,742 | 299 | 0 | |
Sodalis_A | genus | 2 | 9,828 | 50 | 238 | |
Sodalis_B | genus | 1 | 4,374 | 139 | 0 | |
Stammera | genus | 12 | 3,125 | 43 | 41 | |
Steffania | genus | 1 | 795 | 78 | 0 | |
Superficieibacter | genus | 4 | 18,186 | 52 | 186 | |
Symbiopectobacterium | genus | 4 | 21,260 | 337 | 490 | |
Tachikawaea | genus | 1 | 626 | 1 | 0 | |
Tatumella | genus | 6 | 21,235 | 118 | 323 | |
Tenebrionibacter | genus | 4 | 15,288 | 110 | 289 | |
Thorsellia | genus | 1 | 2,928 | 213 | 0 | |
Trabulsiella | genus | 3 | 14,282 | 41 | 193 | |
Tremblaya | genus | 2 | 440 | 6 | 37 | |
UBA7405 | genus | 2 | 7,821 | 3 | 77 | |
VOQV01 | genus | 1 | 717 | 4 | 0 | |
Westeberhardia | genus | 3 | 1,092 | 3 | 20 | |
Wigglesworthia | genus | 2 | 1,295 | 1 | 7 | |
Xenorhabdus | genus | 28 | 108,942 | 2,346 | 1,883 | |
Yersinia | genus | 25 | 103,258 | 1,490 | 1,392 | |
Yokenella | genus | 1 | 4,636 | 51 | 0 | |
Zinderia | genus | 1 | 219 | 14 | 0 | |
Zophobihabitans | genus | 1 | 2,354 | 66 | 0 |