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Hierarchical exploration of TRG genes through taxonomy of Bacteria


Taxon name Taxon rank Species (n) Proteins (n) TRG genus (n) TRG species (n) Details
1-19 genus 2 7,676 8 143
ATCC-39006 genus 1 4,430 91 0
Acerihabitans genus 6 31,612 317 827
Affinibrenneria genus 1 5,159 115 0
Annandia genus 2 641 0 10
Arsenophonus genus 6 23,496 1,124 837
Arsenophonus_A genus 1 633 0 0
Arsenophonus_B genus 1 456 9 0
Atlantibacter genus 5 22,062 87 193
B14 genus 1 3,523 150 0
BIGb0383 genus 1 4,615 37 0
Baumannia genus 4 2,476 2 24
Biostraticola genus 1 3,928 113 0
Blochmannia genus 13 7,989 19 98
Brenneria genus 9 37,695 128 894
Buchnera genus 60 30,110 269 136
Budvicia genus 2 8,154 23 208
Buttiauxella genus 13 57,642 236 675
CALYPF01 genus 1 3,955 151 0
CALYQQ01 genus 1 2,022 50 0
CWE genus 1 565 8 0
Cedecea genus 10 45,481 153 397
Chania genus 3 14,367 23 289
Chimaeribacter genus 4 17,540 161 193
Citrobacter genus 18 84,945 259 717
Citrobacter_A genus 9 42,668 90 343
Citrobacter_B genus 1 6,446 129 0
Citrobacter_C genus 1 5,143 80 0
CjNOSY1 genus 1 530 1 0
Cronobacter genus 7 29,030 152 148
Dickeya genus 11 44,803 268 672
Doolittlea genus 1 662 85 0
Ecksteinia genus 1 459 1 0
Edaphovirga genus 1 4,686 156 0
Edwardsiella genus 5 17,411 171 262
Enterobacillus genus 1 4,257 90 0
Enterobacter genus 39 176,573 386 830
Enterobacter_A genus 1 3,858 24 0
Enterobacter_B genus 2 8,892 15 56
Enterobacter_D genus 4 16,806 22 106
Entomohabitans genus 1 5,139 100 0
Erwinia genus 32 136,920 767 2,747
Erwinia_B genus 1 4,048 63 0
Escherichia genus 10 44,208 243 447
Ewingella genus 4 17,054 23 446
FFU genus 1 904 119 0
Franconibacter genus 2 8,495 15 62
Frischella genus 2 4,664 11 63
Fukatsuia genus 1 3,246 231 0
GBBU genus 1 468 1 0
GCA-001602625 genus 1 2,660 636 0
GCA-012562765 genus 24 10,034 17 25
GCA-022846635 genus 1 3,852 82 0
GCF-000287335 genus 1 925 225 0
GCF-000287355 genus 1 584 16 0
GCF-900161835 genus 1 798 191 0
Gibbsiella genus 1 4,904 69 0
Gillettellia genus 1 708 77 0
Gilliamella genus 31 72,833 1,523 606
Gullanella genus 1 484 4 0
Hafnia genus 4 18,198 153 235
Hamiltonella genus 2 3,379 88 212
Hartigia genus 1 747 41 0
Hoaglandella genus 1 532 7 0
Intestinirhabdus genus 1 4,452 75 0
Ishikawaella genus 1 628 6 0
Izhakiella genus 3 11,648 43 267
JAATFO01 genus 1 3,892 109 0
JAHCVB01 genus 1 891 91 0
JGM124 genus 2 8,580 26 166
Jejubacter genus 1 4,730 68 0
Klebsiella genus 20 103,224 514 786
Kluyvera genus 11 52,962 167 663
Kosakonia genus 15 78,472 530 1,098
Leclercia genus 7 35,793 68 316
Lelliottia genus 8 35,460 43 300
Leminorella genus 2 7,361 31 102
Limnobaculum genus 5 19,261 149 221
Lonsdalea genus 5 17,321 145 313
Mangrovibacter genus 3 13,989 115 184
Mikella genus 2 530 1 6
Mixta genus 8 32,965 187 339
Moellerella genus 1 2,889 52 0
Moranella genus 1 444 11 0
Morganella genus 7 27,486 630 360
Musicola genus 1 4,079 80 0
Nardonella genus 4 857 0 30
Orbus genus 1 2,112 33 0
PD-1 genus 1 4,455 58 0
PRUG genus 1 563 10 0
Pantoea genus 56 253,699 2,662 3,423
Pantoea_A genus 1 834 9 0
Pectobacterium genus 21 91,584 866 927
Phaseolibacter genus 1 2,434 128 0
Photorhabdus genus 15 69,526 1,597 933
Phytobacter genus 5 24,867 70 309
Plesiomonas genus 1 2,928 117 0
Pluralibacter genus 2 9,718 9 84
Pragia genus 1 3,369 43 0
Proteus genus 20 73,803 1,282 340
Providencia genus 15 60,515 570 523
Providencia_A genus 1 636 5 0
Providencia_B genus 1 3,305 83 0
Providencia_C genus 3 12,901 57 175
Providencia_D genus 1 3,913 57 0
Pseudescherichia genus 4 16,287 48 92
Pseudocitrobacter genus 4 18,503 77 167
Purcelliella genus 1 438 3 0
RHBSTW-00994 genus 1 4,556 31 0
Rahnella genus 15 74,437 574 764
Regiella genus 1 2,342 193 0
Riesia genus 2 999 3 38
Rosenbergiella genus 6 18,890 201 262
Rouxiella genus 6 27,888 219 459
SZZU01 genus 1 891 3 0
Salmonella genus 5 21,702 106 268
Samsonia genus 1 3,496 64 0
Scandinavium genus 7 31,508 115 285
Schmidhempelia genus 1 1,952 33 0
Schneideria genus 1 543 2 0
Serratia genus 13 62,616 275 241
Serratia_A genus 5 25,477 68 446
Serratia_B genus 2 10,284 27 107
Serratia_C genus 1 498 0 0
Serratia_D genus 1 739 27 0
Serratia_E genus 1 693 25 0
Serratia_F genus 2 10,044 31 157
Serratia_G genus 1 2,848 75 0
Serratia_H genus 1 1,475 736 0
Serratia_I genus 4 10,702 239 578
Serratia_J genus 10 49,939 220 444
Shimwellia genus 2 7,785 11 80
Siccibacter genus 2 7,868 7 58
SoCistrobi genus 1 3,631 236 0
SoEE genus 5 3,509 7 12
Sodalis genus 1 5,742 299 0
Sodalis_A genus 2 9,828 50 238
Sodalis_B genus 1 4,374 139 0
Stammera genus 12 3,125 43 41
Steffania genus 1 795 78 0
Superficieibacter genus 4 18,186 52 186
Symbiopectobacterium genus 4 21,260 337 490
Tachikawaea genus 1 626 1 0
Tatumella genus 6 21,235 118 323
Tenebrionibacter genus 4 15,288 110 289
Thorsellia genus 1 2,928 213 0
Trabulsiella genus 3 14,282 41 193
Tremblaya genus 2 440 6 37
UBA7405 genus 2 7,821 3 77
VOQV01 genus 1 717 4 0
Westeberhardia genus 3 1,092 3 20
Wigglesworthia genus 2 1,295 1 7
Xenorhabdus genus 28 108,942 2,346 1,883
Yersinia genus 25 103,258 1,490 1,392
Yokenella genus 1 4,636 51 0
Zinderia genus 1 219 14 0
Zophobihabitans genus 1 2,354 66 0