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Hierarchical exploration of TRG genes through taxonomy of Bacteria

Taxon name Taxon rank Species (n) Proteins (n) TRG genus (n) TRG species (n) Details
4484-113 phylum 10 25,933 2,934 323
4572-55 phylum 2 6,275 385 0
AABM5-125-24 phylum 33 92,921 4,029 1,102
ARS69 phylum 3 8,663 498 0
AUK180 phylum 3 7,410 448 253
Abyssobacteria phylum 3 13,265 737 0
Acidobacteriota phylum 1,298 5,411,944 96,248 162,021
Actinomycetota phylum 8,813 36,258,056 904,716 627,753
Aerophobota phylum 14 25,922 836 308
Aquificota phylum 84 138,860 2,583 2,932
Armatimonadota phylum 187 667,326 30,844 21,625
Atribacterota phylum 37 75,763 1,088 2,201
Auribacterota phylum 4 9,446 403 0
B130-G9 phylum 3 7,866 487 0
BMS3Abin14 phylum 9 19,921 580 394
BS750m-G25 phylum 1 2,291 144 0
BS750m-G34 phylum 1 849 16 0
Bacillota phylum 5,292 14,305,297 336,515 266,596
Bacillota_A phylum 11,264 25,455,345 396,358 428,911
Bacillota_B phylum 395 1,107,148 20,085 20,748
Bacillota_C phylum 468 1,080,669 21,484 19,144
Bacillota_D phylum 112 235,746 3,034 3,705
Bacillota_E phylum 145 405,701 15,387 12,206
Bacillota_F phylum 58 155,438 3,821 1,759
Bacillota_G phylum 150 401,486 9,154 6,829
Bacillota_H phylum 19 41,741 1,144 534
Bacteroidota phylum 11,000 32,258,287 577,743 868,826
Bdellovibrionota phylum 385 1,206,160 75,640 41,606
Bipolaricaulota phylum 74 125,808 2,644 3,222
CAIJMQ01 phylum 5 6,706 146 155
CAKKQC01 phylum 2 7,175 373 0
CG03 phylum 16 25,781 754 262
CG2-30-53-67 phylum 5 13,228 138 244
CG2-30-70-394 phylum 2 5,106 186 128
CLD3 phylum 9 29,855 656 385
CSP1-3 phylum 24 66,069 1,289 1,217
CSSED10-310 phylum 9 33,633 2,902 0
Caldisericota phylum 34 50,221 2,360 899
Calditrichota phylum 35 121,185 1,968 1,953
Calescibacterota phylum 3 5,801 131 157
Campylobacterota phylum 682 1,388,878 27,609 25,352
Chlamydiota phylum 254 423,553 35,521 14,697
Chloroflexota phylum 1,910 6,196,560 156,169 147,338
Chrysiogenota phylum 3 7,413 228 0
Cloacimonadota phylum 95 189,442 4,277 3,885
Coprothermobacterota phylum 6 7,838 314 55
Cyanobacteriota phylum 1,830 6,298,918 179,728 152,128
DRYD01 phylum 2 2,776 354 126
DTU030 phylum 11 21,290 291 295
DUMD01 phylum 1 2,100 90 0
DUMJ01 phylum 2 4,601 79 102
DYJV01 phylum 1 2,364 106 0
Deferribacterota phylum 30 71,653 2,429 1,140
Deinococcota phylum 167 559,870 25,476 16,264
Delongbacteria phylum 14 34,120 817 525
Dependentiae phylum 95 103,535 14,802 8,710
Desantisbacteria phylum 2 3,919 155 0
Desulfobacterota phylum 1,244 4,069,100 74,168 101,483
Desulfobacterota_B phylum 111 481,925 10,592 11,686
Desulfobacterota_C phylum 9 32,651 749 300
Desulfobacterota_D phylum 39 65,432 1,033 1,101
Desulfobacterota_E phylum 49 112,067 1,015 1,375
Desulfobacterota_F phylum 351 1,092,184 14,049 19,367
Desulfobacterota_G phylum 31 97,705 1,942 2,374
Dictyoglomota phylum 4 7,342 38 121
Dormibacterota phylum 108 332,672 8,068 8,100
Edwardsbacteria phylum 8 18,444 280 270
Eisenbacteria phylum 41 130,001 4,538 1,428
Elusimicrobiota phylum 258 525,592 13,730 11,055
Eremiobacterota phylum 117 367,124 18,684 7,776
FCPU426 phylum 5 14,921 213 680
FEN-1099 phylum 5 20,474 1,276 0
Fermentibacterota phylum 26 73,449 1,814 1,733
Fibrobacterota phylum 148 448,347 17,438 11,812
Firestonebacteria phylum 8 17,904 333 457
Fusobacteriota phylum 110 235,982 8,797 5,115
GCA-001730085 phylum 2 3,207 366 0
GCA-2686955 phylum 1 3,717 398 0
Gemmatimonadota phylum 336 1,095,910 19,103 27,081
Goldbacteria phylum 9 20,179 899 120
HKB111 phylum 2 3,423 75 360
Hydrogenedentota phylum 56 242,580 8,703 5,426
J088 phylum 1 2,843 294 0
JAAXHH01 phylum 13 48,147 1,303 220
JAAXVQ01 phylum 5 13,409 431 180
JABDJQ01 phylum 5 15,662 394 112
JABMQX01 phylum 2 7,502 775 0
JACIXR01 phylum 2 4,384 118 179
JACPQY01 phylum 2 6,916 540 0
JACPSX01 phylum 1 3,155 190 0
JACPUC01 phylum 1 3,661 219 0
JACPWU01 phylum 2 4,292 159 0
JACQOV01 phylum 1 1,843 93 0
JACRDZ01 phylum 3 7,757 402 0
JADFOP01 phylum 1 2,162 170 0
JADJOY01 phylum 1 7,348 844 0
JAFGBW01 phylum 3 7,800 577 0
JAFGND01 phylum 1 2,724 308 0
JAGLTZ01 phylum 1 1,947 145 0
JAGLYR01 phylum 1 2,822 210 0
JAGOBX01 phylum 1 3,280 401 0
JAGOEH01 phylum 1 3,126 224 0
JAGRBM01 phylum 1 4,137 446 0
JAHJDO01 phylum 2 4,142 40 189
JAJRZV01 phylum 1 2,373 155 0
JAJYCY01 phylum 1 2,475 210 0
JAKLEM01 phylum 1 1,394 82 0
JAMCPX01 phylum 9 18,063 188 262
JANLFM01 phylum 2 3,520 91 123
JdFR-76 phylum 6 18,642 639 129
KSB1 phylum 48 205,505 6,530 3,420
Krumholzibacteriota phylum 58 181,724 3,369 4,099
Latescibacterota phylum 54 238,387 5,160 5,029
Lindowbacteria phylum 3 9,289 428 0
Margulisbacteria phylum 63 106,074 8,567 2,094
Marinisomatota phylum 230 423,172 5,884 8,782
Mcinerneyibacteriota phylum 3 5,833 274 54
Methylomirabilota phylum 80 312,100 4,209 6,641
Moduliflexota phylum 3 15,966 919 0
Muirbacteria phylum 2 6,477 726 0
Myxococcota phylum 664 3,871,455 154,947 109,907
Myxococcota_A phylum 60 248,117 6,879 4,339
Myxococcota_B phylum 1 4,308 451 0
NPL-UPA2 phylum 4 4,883 100 95
Nitrospinota phylum 81 197,344 4,065 3,879
Nitrospinota_B phylum 2 4,951 265 0
Nitrospirota phylum 459 1,349,694 25,186 33,294
Nitrospirota_A phylum 27 50,434 1,586 1,063
Nitrospirota_B phylum 1 2,505 151 0
OLB16 phylum 8 36,420 1,988 0
Omnitrophota phylum 420 680,118 17,748 8,508
PUNC01 phylum 2 4,819 256 0
Patescibacteria phylum 3,374 3,003,764 190,086 138,795
Planctomycetota phylum 1,664 6,486,293 229,667 233,691
Poribacteria phylum 66 301,111 7,469 7,314
Pseudomonadota phylum 21,693 75,107,658 1,357,213 1,284,287
QNDG01 phylum 12 38,769 1,275 0
RBG-13-61-14 phylum 3 11,859 439 306
RBG-13-66-14 phylum 8 17,815 1,088 317
RUG730 phylum 2 2,897 291 0
Ratteibacteria phylum 28 43,513 721 622
Riflebacteria phylum 25 98,247 2,992 2,646
SAR324 phylum 49 152,326 5,510 8,668
SLNR01 phylum 1 1,988 126 0
SM23-31 phylum 3 7,322 496 0
SZUA-182 phylum 8 21,590 1,160 247
SZUA-79 phylum 41 74,779 794 1,107
Schekmanbacteria phylum 4 10,357 295 0
Spirochaetota phylum 919 2,495,389 78,771 46,275
Sumerlaeota phylum 29 93,246 5,974 353
Synergistota phylum 144 306,732 5,947 5,232
T1SED10-198M phylum 1 2,460 286 0
T1Sed10-126 phylum 2 3,926 231 0
TA06 phylum 3 7,676 736 0
TA06_A phylum 2 6,462 516 0
Tectomicrobia phylum 4 28,310 1,070 1,557
Thermodesulfobiota phylum 3 5,596 282 52
Thermosulfidibacterota phylum 8 13,460 120 230
Thermotogota phylum 90 183,164 4,109 2,759
UBA10199 phylum 43 92,892 8,190 253
UBA1439 phylum 1 2,316 164 0
UBA2233 phylum 2 3,600 161 127
UBA3054 phylum 13 23,796 1,774 141
UBA6262 phylum 7 12,204 134 280
UBA6266 phylum 4 7,566 166 313
UBA8248 phylum 13 42,535 745 1,045
UBA8481 phylum 2 4,962 442 0
UBA9089 phylum 9 16,862 668 450
UBP13 phylum 1 2,031 122 0
UBP14 phylum 12 23,857 736 332
UBP15 phylum 5 16,459 980 190
UBP17 phylum 10 42,180 3,391 901
UBP18 phylum 3 3,169 57 58
UBP4 phylum 1 2,967 242 0
UBP6 phylum 23 51,406 1,526 632
UBP7 phylum 3 3,585 237 35
VGIX01 phylum 3 6,606 160 0
Verrucomicrobiota phylum 1,722 5,358,489 142,665 192,329
WOR-3 phylum 89 183,830 8,848 3,878
Wallbacteria phylum 3 10,677 974 259
Zixibacteria phylum 96 266,156 7,517 6,362