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Hierarchical exploration of TRG genes through taxonomy of Bacteria

Taxon name Taxon rank Species (n) Proteins (n) TRG genus (n) TRG species (n) Details
Acetanaerobacterium genus 10 23,562 438 413
Alloruminococcus genus 1 1,800 76 0
Anaerofilum genus 5 11,500 99 243
Anaerotruncus genus 15 43,281 525 915
Angelakisella genus 20 41,838 751 841
Aristotella genus 1 2,071 60 0
Avimicrobium genus 4 7,538 214 219
Bittarella genus 2 5,466 105 131
CAG-115 genus 47 113,485 3,324 1,848
CAG-353 genus 19 46,267 822 1,196
CAKRVU01 genus 1 1,518 115 0
CAKSAY01 genus 1 874 35 0
CALWZA01 genus 1 1,514 35 0
CALWZE01 genus 1 2,177 89 0
CALXAK01 genus 1 1,405 53 0
CALXEL01 genus 1 1,996 39 0
CALXEM01 genus 2 4,988 21 201
CALXEN01 genus 3 5,696 71 23
CALXGT01 genus 2 4,039 88 29
CALXIC01 genus 1 1,793 56 0
Egerieicola genus 3 4,857 209 53
Faecalibacterium genus 61 135,885 2,655 985
Faeciplasma genus 18 34,919 774 526
Faecivivens genus 12 26,302 595 514
Falkowella genus 1 2,252 97 0
Fimivivens genus 11 25,182 341 618
Firm-04 genus 30 74,812 2,782 1,420
Fournierella genus 15 37,060 435 299
Fumia genus 2 4,870 66 115
Gemmiger genus 46 104,173 1,536 952
Gemmiger_A genus 3 8,036 50 52
HGM13222 genus 2 5,105 25 162
HGM13233 genus 1 1,417 64 0
HUN007 genus 11 29,714 781 426
Harryflintia genus 3 8,040 54 150
Heteroruminococcus genus 4 7,478 32 151
Hydrogenoanaerobacterium genus 1 2,930 71 0
JAAVYW01 genus 1 2,482 63 0
JAAYCI01 genus 1 2,289 120 0
JAAYPV01 genus 3 4,931 63 82
JAAYSD01 genus 1 1,742 48 0
JAAZLM01 genus 1 1,358 53 0
JAAZZIT01 genus 4 7,492 63 207
JAEDDN01 genus 1 1,264 16 0
JAEXNS01 genus 1 2,179 80 0
JAEZYS01 genus 2 4,778 93 111
JAFBIO01 genus 1 2,459 67 0
JAGPHI01 genus 1 1,585 69 0
JAHHTP01 genus 1 1,510 47 0
JAHHUA01 genus 2 3,455 91 44
JAIHAL01 genus 1 2,067 38 0
JALELV01 genus 1 2,088 49 0
Ligaoa genus 1 2,735 77 0
Marseille-P2935 genus 1 2,443 126 0
Massiliimalia genus 6 14,396 59 373
Massilioclostridium genus 2 5,324 11 277
Merdivicinus genus 11 28,227 408 312
Metaruminococcus genus 2 4,142 45 99
Negativibacillus genus 13 26,626 563 527
Neobittarella genus 1 2,903 92 0
Neoruminococcus genus 1 1,597 55 0
Pararuminococcus genus 2 4,375 51 79
Phocea genus 1 2,366 77 0
Pseudoruminococcus_B genus 2 4,268 61 141
Pygmaiobacter genus 8 17,563 138 354
QAMM01 genus 5 9,781 186 188
RGIG1943 genus 1 1,640 98 0
RGIG1955 genus 2 1,686 88 89
RGIG3077 genus 1 1,940 74 0
RGIG3102 genus 20 37,085 1,181 689
RGIG4130 genus 1 1,676 49 0
RGIG4131 genus 5 9,234 219 183
RGIG4694 genus 4 10,065 84 290
RGIG5675 genus 1 2,445 57 0
RGIG7389 genus 1 1,482 50 0
RGIG8367 genus 2 2,555 17 75
RGIG8773 genus 14 36,589 705 644
RGIG8779 genus 2 1,853 35 113
RGIG9114 genus 1 1,419 50 0
RUG11783 genus 8 14,894 205 241
RUG12519 genus 7 8,216 472 531
Ruminiclostridium_E genus 60 137,263 4,010 3,283
Ruminococcus genus 117 284,265 7,913 3,881
Ruminococcus_C genus 21 45,459 998 1,107
Ruminococcus_D genus 66 162,079 5,857 3,042
Ruminococcus_F genus 3 5,962 51 103
Ruthenibacterium genus 17 39,046 383 814
SFIE01 genus 1 1,990 69 0
SFJ001 genus 3 5,823 52 99
SIG526 genus 2 4,478 37 87
SIG578 genus 4 5,994 67 99
SZUA-444 genus 5 8,075 119 188
Schneewindia genus 1 1,742 57 0
Soleaferrea genus 1 2,419 105 0
UBA11540 genus 1 1,635 84 0
UBA1366 genus 1 1,851 110 0
UBA1394 genus 12 25,738 318 628
UBA1404 genus 1 1,670 56 0
UBA1405 genus 3 8,983 93 204
UBA1762 genus 3 6,486 33 183
UBA1771 genus 1 1,200 64 0
UBA3818 genus 8 15,009 194 211
UBA3855 genus 26 61,746 1,523 1,250
UBA5884 genus 5 8,552 129 229
UBA7177 genus 3 7,308 61 163
UBA7477 genus 4 7,341 91 150
UBA866 genus 6 14,159 200 374
UBA946 genus 2 5,441 8 311
UMGS1601 genus 4 6,637 107 149
UMGS1668 genus 20 35,568 1,200 432
UMGS1889 genus 4 9,944 220 171
UMGS363 genus 9 20,725 239 344
WRAV01 genus 5 12,098 81 530
WRIP01 genus 2 3,305 3 88
WRME01 genus 2 2,952 4 125